J3_6TBV_022

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_022 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0499

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6TBV|1|23S1|C|2091
6TBV|1|23S1|U|2092
6TBV|1|23S1|G|2093
*
6TBV|1|23S1|C|2196
6TBV|1|23S1|U|2197
6TBV|1|23S1|A|2198
6TBV|1|23S1|A|2199
6TBV|1|23S1|C|2200
*
6TBV|1|23S1|G|2223
6TBV|1|23S1|G|2224
6TBV|1|23S1|A|2225
6TBV|1|23S1|C|2226
6TBV|1|23S1|A|2227
6TBV|1|23S1|G|2228

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L021

50S ribosomal protein L2

Chain L091

50S ribosomal protein L9

Chain L281

50S ribosomal protein L28