J3_6TBV_034

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6TBV|1|23S1|U|34, 6TBV|1|23S1|U|448, 6TBV|1|23S1|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TBV_034 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.0683

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6TBV|1|23S1|C|32
6TBV|1|23S1|C|33
6TBV|1|23S1|U|34
6TBV|1|23S1|G|35
*
6TBV|1|23S1|C|445
6TBV|1|23S1|G|446
6TBV|1|23S1|A|447
6TBV|1|23S1|U|448
6TBV|1|23S1|A|449
6TBV|1|23S1|G|450
6TBV|1|23S1|U|451
6TBV|1|23S1|G|452
6TBV|1|23S1|A|453
6TBV|1|23S1|A|454
6TBV|1|23S1|C|455
6TBV|1|23S1|C|456
6TBV|1|23S1|A|457
6TBV|1|23S1|G|458
6TBV|1|23S1|U|459
6TBV|1|23S1|A|460
6TBV|1|23S1|C|461
*
6TBV|1|23S1|G|468
6TBV|1|23S1|G|469
6TBV|1|23S1|A|470
6TBV|1|23S1|A|471
6TBV|1|23S1|A|472
6TBV|1|23S1|G|473

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L201

50S ribosomal protein L20

Chain L231

50S ribosomal protein L23

Chain L341

50S ribosomal protein L34

Chain SPE1

SpeFL