J3_6TC3_011

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_011 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1542

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6TC3|1|16S1|U|1073
6TC3|1|16S1|G|1074
*
6TC3|1|16S1|U|1083
6TC3|1|16S1|G|1084
6TC3|1|16S1|U|1085
6TC3|1|16S1|U|1086
6TC3|1|16S1|G|1087
*
6TC3|1|16S1|C|1098
6TC3|1|16S1|G|1099
6TC3|1|16S1|C|1100
6TC3|1|16S1|A|1101
6TC3|1|16S1|A|1102

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S021

30S ribosomal protein S2

Chain S051

30S ribosomal protein S5