J3_6TC3_015
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 6TC3|1|23S1|A|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TC3_015 not in the Motif Atlas
- Homologous match to J3_5J7L_037
- Geometric discrepancy: 0.0667
- The information below is about J3_5J7L_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6TC3|1|23S1|A|56
6TC3|1|23S1|C|57
*
6TC3|1|23S1|G|70
6TC3|1|23S1|A|71
6TC3|1|23S1|U|72
6TC3|1|23S1|A|73
6TC3|1|23S1|A|74
6TC3|1|23S1|G|75
6TC3|1|23S1|C|76
*
6TC3|1|23S1|G|110
6TC3|1|23S1|A|111
6TC3|1|23S1|U|112
6TC3|1|23S1|U|113
6TC3|1|23S1|U|114
Current chains
- Chain 23S1
- 23S rRNA
Nearby chains
- Chain L231
- 50S ribosomal protein L23
- Chain L291
- 50S ribosomal protein L29
- Chain L341
- 50S ribosomal protein L34
Coloring options: