J3_6TC3_029

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6TC3|1|16S1|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1184

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6TC3|1|16S1|C|990
6TC3|1|16S1|U|991
6TC3|1|16S1|U|992
6TC3|1|16S1|G|993
6TC3|1|16S1|A|994
6TC3|1|16S1|C|995
6TC3|1|16S1|A|996
6TC3|1|16S1|U|997
*
6TC3|1|16S1|A|1044
6TC3|1|16S1|C|1045
6TC3|1|16S1|A|1046
6TC3|1|16S1|G|1047
*
6TC3|1|16S1|C|1210
6TC3|1|16S1|U|1211
6TC3|1|16S1|U|1212
6TC3|1|16S1|A|1213
6TC3|1|16S1|C|1214
6TC3|1|16S1|G|1215

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S141

30S ribosomal protein S14