J3_6TC3_030

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAGUUUUC*GAGAAUGUGCC*GGAAC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6TC3|1|16S1|G|1003
6TC3|1|16S1|A|1004
6TC3|1|16S1|A|1005
6TC3|1|16S1|G|1006
6TC3|1|16S1|U|1007
6TC3|1|16S1|U|1008
6TC3|1|16S1|U|1009
6TC3|1|16S1|U|1010
6TC3|1|16S1|C|1011
*
6TC3|1|16S1|G|1018
6TC3|1|16S1|A|1019
6TC3|1|16S1|G|1020
6TC3|1|16S1|A|1021
6TC3|1|16S1|A|1022
6TC3|1|16S1|U|1023
6TC3|1|16S1|G|1024
6TC3|1|16S1|U|1025
6TC3|1|16S1|G|1026
6TC3|1|16S1|C|1027
6TC3|1|16S1|C|1028
*
6TC3|1|16S1|G|1033
6TC3|1|16S1|G|1034
6TC3|1|16S1|A|1035
6TC3|1|16S1|A|1036
6TC3|1|16S1|C|1037

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S141

30S ribosomal protein S14

Chain S191

30S ribosomal protein S19