J3_6TC3_035

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6TC3|1|23S1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TC3_035 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0498

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6TC3|1|23S1|G|297
6TC3|1|23S1|G|298
6TC3|1|23S1|A|299
6TC3|1|23S1|A|300
6TC3|1|23S1|G|301
*
6TC3|1|23S1|C|316
6TC3|1|23S1|G|317
6TC3|1|23S1|C|318
6TC3|1|23S1|G|319
6TC3|1|23S1|A|320
6TC3|1|23S1|U|321
6TC3|1|23S1|A|322
6TC3|1|23S1|C|323
6TC3|1|23S1|A|324
6TC3|1|23S1|G|325
*
6TC3|1|23S1|C|337
6TC3|1|23S1|G|338
6TC3|1|23S1|U|339
6TC3|1|23S1|A|340
6TC3|1|23S1|C|341

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L241

50S ribosomal protein L24