J3_6TH6_025
3D structure
- PDB id
- 6TH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- CCAUAG*CGUUC*GAACG
- Length
- 16 nucleotides
- Bulged bases
- 6TH6|1|BB|U|14, 6TH6|1|BB|C|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TH6_025 not in the Motif Atlas
- Homologous match to J3_4V9F_010
- Geometric discrepancy: 0.2163
- The information below is about J3_4V9F_010
- Detailed Annotation
- 5S rRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89737.1
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6TH6|1|BB|C|11
6TH6|1|BB|C|12
6TH6|1|BB|A|13
6TH6|1|BB|U|14
6TH6|1|BB|A|15
6TH6|1|BB|G|16
*
6TH6|1|BB|C|68
6TH6|1|BB|G|69
6TH6|1|BB|U|70
6TH6|1|BB|U|71
6TH6|1|BB|C|72
*
6TH6|1|BB|G|111
6TH6|1|BB|A|112
6TH6|1|BB|A|113
6TH6|1|BB|C|114
6TH6|1|BB|G|115
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
- Chain BQ
- 50S ribosomal protein L18
- Chain BU
- 50S ribosomal protein L21e
Coloring options: