J3_6TH6_033
3D structure
- PDB id
- 6TH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.55 Å
Loop
- Sequence
- (OMG)C*GAUAAGC*GAUGC
- Length
- 14 nucleotides
- Bulged bases
- 6TH6|1|BA|U|81, 6TH6|1|BA|A|83
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TH6_033 not in the Motif Atlas
- Homologous match to J3_4V9F_014
- Geometric discrepancy: 0.0974
- The information below is about J3_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
6TH6|1|BA|OMG|65
6TH6|1|BA|C|66
*
6TH6|1|BA|G|79
6TH6|1|BA|A|80
6TH6|1|BA|U|81
6TH6|1|BA|A|82
6TH6|1|BA|A|83
6TH6|1|BA|G|84
6TH6|1|BA|C|85
*
6TH6|1|BA|G|118
6TH6|1|BA|A|119
6TH6|1|BA|U|120
6TH6|1|BA|G|121
6TH6|1|BA|C|122
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BW
- 50S ribosomal protein L23
- Chain BZ
- 50S ribosomal protein L29
- Chain Bh
- 50S ribosomal protein L37e
- Chain Bi
- 50S ribosomal protein L39e
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