J3_6TNN_001

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNN_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1508

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6TNN|1|U|G|28
6TNN|1|U|C|29
*
6TNN|1|U|G|519
6TNN|1|U|U|520
6TNN|1|U|G|521
6TNN|1|U|A|522
6TNN|1|U|A|523
6TNN|1|U|A|524
6TNN|1|U|A|525
6TNN|1|U|G|526
*
6TNN|1|U|C|553
6TNN|1|U|C|554

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain j

50S ribosomal protein L20

Chain n

50S ribosomal protein L24