J3_6TNN_007

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNN_007 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1428

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6TNN|1|U|C|1335
6TNN|1|U|G|1336
6TNN|1|U|A|1337
6TNN|1|U|A|1338
6TNN|1|U|U|1339
6TNN|1|U|G|1340
*
6TNN|1|U|C|1668
6TNN|1|U|G|1669
6TNN|1|U|A|1670
*
6TNN|1|U|U|1682
6TNN|1|U|A|1683
6TNN|1|U|A|1684
6TNN|1|U|G|1685

Current chains

Chain U

pre-23S rRNA

Nearby chains