J3_6TNN_011

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6TNN|1|U|A|2545, 6TNN|1|U|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNN_011 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.1339

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6TNN|1|U|C|2544
6TNN|1|U|A|2545
6TNN|1|U|U|2546
6TNN|1|U|C|2547
*
6TNN|1|U|G|2572
6TNN|1|U|U|2573
6TNN|1|U|U|2574
*
6TNN|1|U|A|2588
6TNN|1|U|U|2589
6TNN|1|U|U|2590
6TNN|1|U|A|2591
6TNN|1|U|A|2592
6TNN|1|U|A|2593
6TNN|1|U|G|2594

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain d

50S ribosomal protein L14