J3_6TNU_005
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 6TNU|1|2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TNU_005 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.2598
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6TNU|1|2|C|1037
6TNU|1|2|U|1038
6TNU|1|2|A|1039
*
6TNU|1|2|U|1079
6TNU|1|2|U|1080
6TNU|1|2|A|1081
6TNU|1|2|C|1082
6TNU|1|2|G|1083
*
6TNU|1|2|C|1090
6TNU|1|2|A|1091
6TNU|1|2|A|1092
6TNU|1|2|A|1093
6TNU|1|2|G|1094
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain P
- 40S ribosomal protein S0-A
- Chain a
- 40S ribosomal protein S21-A
- Chain b
- 40S ribosomal protein S22-A
- Chain e
- 40S ribosomal protein S26-B
- Chain f
- 40S ribosomal protein S27-A
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