J3_6TNU_021

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

6TNU|1|BQ|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNU_021 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1047

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6TNU|1|BQ|U|1479
6TNU|1|BQ|G|1480
6TNU|1|BQ|A|1481
6TNU|1|BQ|A|1482
6TNU|1|BQ|G|1483
6TNU|1|BQ|U|1484
6TNU|1|BQ|G|1485
*
6TNU|1|BQ|C|1857
6TNU|1|BQ|A|1858
6TNU|1|BQ|A|1859
*
6TNU|1|BQ|U|1871
6TNU|1|BQ|C|1872
6TNU|1|BQ|U|1873
6TNU|1|BQ|A|1874

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A