J3_6TNU_032

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

6TNU|1|2|A|46, 6TNU|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TNU_032 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0754

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6TNU|1|2|A|41
6TNU|1|2|G|42
6TNU|1|2|A|43
6TNU|1|2|U|44
6TNU|1|2|U|45
6TNU|1|2|A|46
6TNU|1|2|A|47
6TNU|1|2|G|48
*
6TNU|1|2|C|431
6TNU|1|2|G|432
6TNU|1|2|C|433
6TNU|1|2|G|434
6TNU|1|2|C|435
6TNU|1|2|A|436
6TNU|1|2|A|437
6TNU|1|2|A|438
6TNU|1|2|U|439
*
6TNU|1|2|A|464
6TNU|1|2|G|465
6TNU|1|2|U|466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A