J3_6TNU_038
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 6TNU|1|BQ|U|343, 6TNU|1|BQ|A|351, 6TNU|1|BS|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TNU_038 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0667
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6TNU|1|BQ|C|340
6TNU|1|BQ|G|341
6TNU|1|BQ|A|342
6TNU|1|BQ|U|343
6TNU|1|BQ|A|344
6TNU|1|BQ|G|345
6TNU|1|BQ|C|346
6TNU|1|BQ|G|347
6TNU|1|BQ|A|348
6TNU|1|BQ|A|349
6TNU|1|BQ|C|350
6TNU|1|BQ|A|351
6TNU|1|BQ|A|352
6TNU|1|BQ|G|353
6TNU|1|BQ|U|354
6TNU|1|BQ|A|355
6TNU|1|BQ|C|356
*
6TNU|1|BQ|G|363
6TNU|1|BQ|G|364
6TNU|1|BQ|A|365
6TNU|1|BQ|A|366
6TNU|1|BQ|A|367
6TNU|1|BQ|G|368
*
6TNU|1|BS|C|21
6TNU|1|BS|U|22
6TNU|1|BS|U|23
6TNU|1|BS|G|24
Current chains
- Chain BQ
- 25S rRNA
- Chain BS
- 5.8S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AK
- 60S ribosomal protein L26-A
- Chain AL
- 60S ribosomal protein L39
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: