J3_6TPQ_005

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TPQ_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0924

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6TPQ|1|U|C|743
6TPQ|1|U|A|744
6TPQ|1|U|G|745
*
6TPQ|1|U|C|777
6TPQ|1|U|G|778
6TPQ|1|U|A|779
6TPQ|1|U|A|780
6TPQ|1|U|C|781
*
6TPQ|1|U|G|805
6TPQ|1|U|A|806
6TPQ|1|U|U|807
6TPQ|1|U|G|808

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain W

50S ribosomal protein L2