J3_6TPQ_006

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TPQ_006 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.293

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6TPQ|1|U|G|1099
6TPQ|1|U|G|1100
6TPQ|1|U|A|1101
*
6TPQ|1|U|U|1125
6TPQ|1|U|U|1126
6TPQ|1|U|U|1127
6TPQ|1|U|A|1128
6TPQ|1|U|A|1129
6TPQ|1|U|A|1130
6TPQ|1|U|G|1131
*
6TPQ|1|U|C|1146
6TPQ|1|U|A|1147
6TPQ|1|U|C|1148

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain b

50S ribosomal protein L10

Chain t

50S ribosomal protein L36