J3_6TPQ_007

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

CGAAUG*CGA*UAAG

Length

13 nucleotides

Bulged bases

6TPQ|1|U|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6TPQ_007 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1423

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6TPQ|1|U|C|1335
6TPQ|1|U|G|1336
6TPQ|1|U|A|1337
6TPQ|1|U|A|1338
6TPQ|1|U|U|1339
6TPQ|1|U|G|1340
*
6TPQ|1|U|C|1668
6TPQ|1|U|G|1669
6TPQ|1|U|A|1670
*
6TPQ|1|U|U|1682
6TPQ|1|U|A|1683
6TPQ|1|U|A|1684
6TPQ|1|U|G|1685

Current chains

Chain U

pre-23S rRNA

Nearby chains