J3_6TPQ_008
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CUAAG*CGCAAAC*GUAG
- Length
- 16 nucleotides
- Bulged bases
- 6TPQ|1|U|A|1652
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_008 not in the Motif Atlas
- Homologous match to J3_4WF9_005
- Geometric discrepancy: 0.1733
- The information below is about J3_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68164.1
- Basepair signature
- cWW-tSH-F-F-tHW-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6TPQ|1|U|C|1342
6TPQ|1|U|U|1343
6TPQ|1|U|A|1344
6TPQ|1|U|A|1345
6TPQ|1|U|G|1346
*
6TPQ|1|U|C|1648
6TPQ|1|U|G|1649
6TPQ|1|U|C|1650
6TPQ|1|U|A|1651
6TPQ|1|U|A|1652
6TPQ|1|U|A|1653
6TPQ|1|U|C|1654
*
6TPQ|1|U|G|1663
6TPQ|1|U|U|1664
6TPQ|1|U|A|1665
6TPQ|1|U|G|1666
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain r
- 50S ribosomal protein L34
Coloring options: