J3_6TPQ_010
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 6TPQ|1|U|C|2361, 6TPQ|1|U|A|2363
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_010 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1874
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6TPQ|1|U|C|2322
6TPQ|1|U|U|2323
6TPQ|1|U|C|2324
*
6TPQ|1|U|G|2348
6TPQ|1|U|A|2349
6TPQ|1|U|G|2350
*
6TPQ|1|U|C|2359
6TPQ|1|U|A|2360
6TPQ|1|U|C|2361
6TPQ|1|U|A|2362
6TPQ|1|U|A|2363
6TPQ|1|U|G|2364
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain V
- 5S ribosomal RNA; 5S rRNA
- Chain Z
- 50S ribosomal protein L5
- Chain h
- 50S ribosomal protein L18
- Chain o
- 50S ribosomal protein L27
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