J3_6TPQ_011
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6TPQ|1|U|A|2545, 6TPQ|1|U|U|2546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_011 not in the Motif Atlas
- Homologous match to J3_4WF9_009
- Geometric discrepancy: 0.1232
- The information below is about J3_4WF9_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.6
- Basepair signature
- cWW-cWH-cWW-tWH-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6TPQ|1|U|C|2544
6TPQ|1|U|A|2545
6TPQ|1|U|U|2546
6TPQ|1|U|C|2547
*
6TPQ|1|U|G|2572
6TPQ|1|U|U|2573
6TPQ|1|U|U|2574
*
6TPQ|1|U|A|2588
6TPQ|1|U|U|2589
6TPQ|1|U|U|2590
6TPQ|1|U|A|2591
6TPQ|1|U|A|2592
6TPQ|1|U|A|2593
6TPQ|1|U|G|2594
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain d
- 50S ribosomal protein L14
Coloring options: