J3_6TPQ_012
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- CAU*AGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6TPQ_012 not in the Motif Atlas
- Homologous match to J3_7A0S_012
- Geometric discrepancy: 0.1885
- The information below is about J3_7A0S_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20574.1
- Basepair signature
- cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6TPQ|1|U|C|2816
6TPQ|1|U|A|2817
6TPQ|1|U|U|2818
*
6TPQ|1|U|A|2829
6TPQ|1|U|G|2830
6TPQ|1|U|U|2831
6TPQ|1|U|A|2832
6TPQ|1|U|A|2833
6TPQ|1|U|G|2834
*
6TPQ|1|U|C|2912
6TPQ|1|U|G|2913
6TPQ|1|U|A|2914
6TPQ|1|U|G|2915
6TPQ|1|U|G|2916
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
Coloring options: