J3_6U48_002

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

AC*GAUAAGC*GAUUU

Length

14 nucleotides

Bulged bases

6U48|1|CA|A|74

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_002 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.0666

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|A|56
6U48|1|CA|C|57
*
6U48|1|CA|G|70
6U48|1|CA|A|71
6U48|1|CA|U|72
6U48|1|CA|A|73
6U48|1|CA|A|74
6U48|1|CA|G|75
6U48|1|CA|C|76
*
6U48|1|CA|G|110
6U48|1|CA|A|111
6U48|1|CA|U|112
6U48|1|CA|U|113
6U48|1|CA|U|114

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C3

50S ribosomal protein bL34

Chain CU

50S ribosomal protein uL23

Chain CZ

50S ribosomal protein uL29