J3_6U48_003

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6U48|1|CA|U|686, 6U48|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0648

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|U|683
6U48|1|CA|G|684
6U48|1|CA|A|685
6U48|1|CA|U|686
6U48|1|CA|C|687
6U48|1|CA|U|688
6U48|1|CA|A|689
*
6U48|1|CA|U|773
6U48|1|CA|G|774
6U48|1|CA|G|775
*
6U48|1|CA|C|791
6U48|1|CA|A|792
6U48|1|CA|A|793
6U48|1|CA|A|794

Current chains

Chain CA

23S rRNA

Nearby chains

Chain A

phazolicin

Chain C3

50S ribosomal protein bL34

Chain CC

50S ribosomal protein uL2