J3_6U48_010

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUAAUC*GAGGUUAG*CAUAAG

Length

20 nucleotides

Bulged bases

6U48|1|CA|U|2334, 6U48|1|CA|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6U48|1|CA|C|2295
6U48|1|CA|U|2296
6U48|1|CA|A|2297
6U48|1|CA|A|2298
6U48|1|CA|U|2299
6U48|1|CA|C|2300
*
6U48|1|CA|G|2316
6U48|1|CA|A|2317
6U48|1|CA|G|2318
6U48|1|CA|G|2319
6U48|1|CA|U|2320
6U48|1|CA|U|2321
6U48|1|CA|A|2322
6U48|1|CA|G|2323
*
6U48|1|CA|C|2332
6U48|1|CA|A|2333
6U48|1|CA|U|2334
6U48|1|CA|A|2335
6U48|1|CA|A|2336
6U48|1|CA|G|2337

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CF

50S ribosomal protein uL5

Chain CP

50S ribosomal protein uL18

Chain CX

50S ribosomal protein bL27