J3_6U48_011

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

6U48|1|CA|A|2518, 6U48|1|CA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0902

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6U48|1|CA|C|2517
6U48|1|CA|A|2518
6U48|1|CA|U|2519
6U48|1|CA|C|2520
*
6U48|1|CA|G|2545
6U48|1|CA|U|2546
6U48|1|CA|A|2547
*
6U48|1|CA|U|2561
6U48|1|CA|U|2562
6U48|1|CA|U|2563
6U48|1|CA|A|2564
6U48|1|CA|A|2565
6U48|1|CA|A|2566
6U48|1|CA|G|2567

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CL

50S ribosomal protein uL14