J3_6U48_017

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6U48|1|CA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6U48_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.075

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|G|297
6U48|1|CA|G|298
6U48|1|CA|A|299
6U48|1|CA|A|300
6U48|1|CA|G|301
*
6U48|1|CA|C|316
6U48|1|CA|G|317
6U48|1|CA|C|318
6U48|1|CA|G|319
6U48|1|CA|A|320
6U48|1|CA|U|321
6U48|1|CA|A|322
6U48|1|CA|C|323
6U48|1|CA|A|324
6U48|1|CA|G|325
*
6U48|1|CA|C|337
6U48|1|CA|G|338
6U48|1|CA|U|339
6U48|1|CA|A|340
6U48|1|CA|C|341

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CV

50S ribosomal protein uL24