J3_6U48_019
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6U48|1|CA|A|2388, 6U48|1|CA|U|2390, 6U48|1|CA|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6U48_019 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.075
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6U48|1|CA|G|2282
6U48|1|CA|C|2283
6U48|1|CA|A|2284
*
6U48|1|CA|U|2384
6U48|1|CA|C|2385
6U48|1|CA|A|2386
6U48|1|CA|U|2387
6U48|1|CA|A|2388
6U48|1|CA|G|2389
6U48|1|CA|U|2390
6U48|1|CA|G|2391
6U48|1|CA|A|2392
6U48|1|CA|U|2393
6U48|1|CA|C|2394
6U48|1|CA|C|2395
*
6U48|1|CA|G|2421
6U48|1|CA|C|2422
6U48|1|CA|U|2423
6U48|1|CA|C|2424
6U48|1|CA|A|2425
6U48|1|CA|A|2426
6U48|1|CA|C|2427
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C2
- 50S ribosomal protein bL33
- Chain C4
- 50S ribosomal protein bL35
- Chain CM
- 50S ribosomal protein uL15
- Chain CX
- 50S ribosomal protein bL27
Coloring options: