J3_6UC8_001

3D structure

PDB id

6UC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Guanine riboswitch bound to 8-aminoguanine

Experimental method

X-RAY DIFFRACTION

Resolution

1.9 Å

Loop

Sequence

AUAAU*AGUUUCUACC*GACU

Length

19 nucleotides

Bulged bases

6UC8|1|B|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UC8_001 not in the Motif Atlas

Homologous match to J3_4XNR_001

Geometric discrepancy: 0.0731

The information below is about J3_4XNR_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44163.4

Basepair signature

cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

6UC8|1|B|A|21
6UC8|1|B|U|22
6UC8|1|B|A|23
6UC8|1|B|A|24
6UC8|1|B|U|25
*
6UC8|1|B|A|45
6UC8|1|B|G|46
6UC8|1|B|U|47
6UC8|1|B|U|48
6UC8|1|B|U|49
6UC8|1|B|C|50
6UC8|1|B|U|51
6UC8|1|B|A|52
6UC8|1|B|C|53
6UC8|1|B|C|54
*
6UC8|1|B|G|72
6UC8|1|B|A|73
6UC8|1|B|C|74
6UC8|1|B|U|75

Current chains

Chain B

Guanine riboswitch

Nearby chains