J3_6UCQ_012

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6UCQ|1|1A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UCQ_012 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0958

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6UCQ|1|1A|C|2517
6UCQ|1|1A|A|2518
6UCQ|1|1A|U|2519
6UCQ|1|1A|C|2520
*
6UCQ|1|1A|G|2545
6UCQ|1|1A|U|2546
6UCQ|1|1A|U|2547
*
6UCQ|1|1A|A|2561
6UCQ|1|1A|U|2562
6UCQ|1|1A|U|2563
6UCQ|1|1A|A|2564
6UCQ|1|1A|A|2565
6UCQ|1|1A|A|2566
6UCQ|1|1A|G|2567

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14