J3_6UO1_004

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6UO1|1|1A|G|686, 6UO1|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_004 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0476

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6UO1|1|1A|C|683
6UO1|1|1A|G|684
6UO1|1|1A|A|685
6UO1|1|1A|G|686
6UO1|1|1A|C|687
6UO1|1|1A|U|688
6UO1|1|1A|A|689
*
6UO1|1|1A|U|773
6UO1|1|1A|A|774
6UO1|1|1A|G|775
*
6UO1|1|1A|C|791
6UO1|1|1A|G|792
6UO1|1|1A|A|793
6UO1|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2