J3_6UO1_038

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6UO1|1|2A|A|2518, 6UO1|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_038 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0824

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6UO1|1|2A|C|2517
6UO1|1|2A|A|2518
6UO1|1|2A|U|2519
6UO1|1|2A|C|2520
*
6UO1|1|2A|G|2545
6UO1|1|2A|U|2546
6UO1|1|2A|U|2547
*
6UO1|1|2A|A|2561
6UO1|1|2A|U|2562
6UO1|1|2A|U|2563
6UO1|1|2A|A|2564
6UO1|1|2A|A|2565
6UO1|1|2A|A|2566
6UO1|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2N

50S ribosomal protein L13

Chain 2O

50S ribosomal protein L14