J3_6UO1_061
3D structure
- PDB id
- 6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGGC*GCUAGA*UGACG
- Length
- 15 nucleotides
- Bulged bases
- 6UO1|1|1a|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UO1_061 not in the Motif Atlas
- Geometric match to J3_1G1X_006
- Geometric discrepancy: 0.1967
- The information below is about J3_1G1X_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6UO1|1|1a|C|586
6UO1|1|1a|G|587
6UO1|1|1a|G|588
6UO1|1|1a|C|589
*
6UO1|1|1a|G|650
6UO1|1|1a|C|651
6UO1|1|1a|U|652
6UO1|1|1a|A|653
6UO1|1|1a|G|654
6UO1|1|1a|A|655
*
6UO1|1|1a|U|751
6UO1|1|1a|G|752
6UO1|1|1a|A|753
6UO1|1|1a|C|754
6UO1|1|1a|G|755
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
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