J3_6UO1_064

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6UO1|1|2A|U|504, 6UO1|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_064 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0704

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6UO1|1|2A|G|30
6UO1|1|2A|C|31
*
6UO1|1|2A|G|474
6UO1|1|2A|U|475
6UO1|1|2A|G|476
6UO1|1|2A|A|477
6UO1|1|2A|A|478
6UO1|1|2A|A|479
6UO1|1|2A|A|480
6UO1|1|2A|G|481
6UO1|1|2A|A|482
6UO1|1|2A|A|483
6UO1|1|2A|C|484
*
6UO1|1|2A|G|496
6UO1|1|2A|A|497
6UO1|1|2A|G|498
6UO1|1|2A|U|499
6UO1|1|2A|G|500
6UO1|1|2A|A|501
6UO1|1|2A|A|502
6UO1|1|2A|A|503
6UO1|1|2A|U|504
6UO1|1|2A|A|505
6UO1|1|2A|G|506
6UO1|1|2A|A|507
6UO1|1|2A|G|508
6UO1|1|2A|C|509
6UO1|1|2A|C|510

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24