J3_6UO1_065

3D structure

PDB id

6UO1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6UO1|1|2A|U|448, 6UO1|1|2A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UO1_065 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0883

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6UO1|1|2A|C|32
6UO1|1|2A|U|33
6UO1|1|2A|C|34
6UO1|1|2A|G|35
*
6UO1|1|2A|C|445
6UO1|1|2A|G|446
6UO1|1|2A|A|447
6UO1|1|2A|U|448
6UO1|1|2A|A|449
6UO1|1|2A|G|450
6UO1|1|2A|C|451
6UO1|1|2A|G|452
6UO1|1|2A|C|453
6UO1|1|2A|A|454
6UO1|1|2A|C|455
6UO1|1|2A|C|456
6UO1|1|2A|A|457
6UO1|1|2A|G|458
6UO1|1|2A|U|459
6UO1|1|2A|A|460
6UO1|1|2A|C|461
*
6UO1|1|2A|G|468
6UO1|1|2A|G|469
6UO1|1|2A|A|470
6UO1|1|2A|A|471
6UO1|1|2A|A|472
6UO1|1|2A|G|473

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2F

50S ribosomal protein L4

Chain 2U

50S ribosomal protein L20

Chain 2X

50S ribosomal protein L23