J3_6UZ7_001

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UZ7_001 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.186

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

6UZ7|1|2|A|41
6UZ7|1|2|G|42
*
6UZ7|1|2|C|432
6UZ7|1|2|G|433
6UZ7|1|2|C|434
6UZ7|1|2|A|435
6UZ7|1|2|A|436
6UZ7|1|2|A|437
6UZ7|1|2|U|438
*
6UZ7|1|2|A|463
6UZ7|1|2|G|464
6UZ7|1|2|U|465

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

KLLA0F23265p

Chain J

KLLA0E23673p

Chain X

RPS23