J3_6UZ7_005

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UZ7_005 not in the Motif Atlas

Homologous match to J3_8C3A_038

Geometric discrepancy: 0.214

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6UZ7|1|2|C|1160
6UZ7|1|2|C|1161
6UZ7|1|2|A|1162
6UZ7|1|2|G|1163
*
6UZ7|1|2|C|1579
6UZ7|1|2|U|1580
6UZ7|1|2|A|1581
6UZ7|1|2|G|1582
6UZ7|1|2|U|1583
6UZ7|1|2|A|1584
6UZ7|1|2|A|1585
*
6UZ7|1|2|U|1607
6UZ7|1|2|G|1608
6UZ7|1|2|A|1609
6UZ7|1|2|U|1610
6UZ7|1|2|U|1611
6UZ7|1|2|A|1612
6UZ7|1|2|C|1613
6UZ7|1|2|G|1614

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28