J3_6UZ7_013
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UC*GAGGAUUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 6UZ7|1|5|A|580
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UZ7_013 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.124
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6UZ7|1|5|U|473
6UZ7|1|5|C|474
*
6UZ7|1|5|G|561
6UZ7|1|5|A|562
6UZ7|1|5|G|563
6UZ7|1|5|G|564
6UZ7|1|5|A|565
6UZ7|1|5|U|566
6UZ7|1|5|U|567
6UZ7|1|5|G|568
6UZ7|1|5|C|569
6UZ7|1|5|G|570
*
6UZ7|1|5|C|579
6UZ7|1|5|A|580
6UZ7|1|5|A|581
6UZ7|1|5|G|582
6UZ7|1|5|G|583
6UZ7|1|5|A|584
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain AC
- KLLA0B07139p
- Chain AE
- KLLA0B04686p
- Chain AF
- KLLA0D03410p
- Chain Be
- KLLA0E06843p
Coloring options: