J3_6UZ7_016

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6UZ7_016 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2437

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6UZ7|1|5|G|1201
6UZ7|1|5|A|1202
6UZ7|1|5|C|1203
*
6UZ7|1|5|G|1227
6UZ7|1|5|C|1228
6UZ7|1|5|U|1229
6UZ7|1|5|A|1230
6UZ7|1|5|A|1231
6UZ7|1|5|G|1232
6UZ7|1|5|G|1233
*
6UZ7|1|5|C|1248
6UZ7|1|5|A|1249
6UZ7|1|5|C|1250

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AK

GDPCP

Chain Br

60S acidic ribosomal protein P0