J3_6UZ7_019
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UZ7_019 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1242
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6UZ7|1|5|U|1497
6UZ7|1|5|C|1498
6UZ7|1|5|G|1499
6UZ7|1|5|A|1500
6UZ7|1|5|U|1501
6UZ7|1|5|C|1502
*
6UZ7|1|5|G|1560
6UZ7|1|5|G|1561
6UZ7|1|5|A|1562
6UZ7|1|5|A|1563
6UZ7|1|5|U|1564
*
6UZ7|1|5|A|1581
6UZ7|1|5|A|1582
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- 60S ribosomal protein L25
- Chain Bg
- KLLA0C08371p
- Chain Bk
- KLLA0C18216p
- Chain Bl
- 60S ribosomal protein L39
Coloring options: