J3_6UZ7_037
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6UZ7|1|5|A|398, 6UZ7|1|5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6UZ7_037 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1082
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6UZ7|1|5|A|369
6UZ7|1|5|U|370
6UZ7|1|5|G|371
6UZ7|1|5|A|372
6UZ7|1|5|A|373
6UZ7|1|5|A|374
6UZ7|1|5|A|375
6UZ7|1|5|G|376
6UZ7|1|5|A|377
6UZ7|1|5|A|378
6UZ7|1|5|C|379
*
6UZ7|1|5|G|390
6UZ7|1|5|A|391
6UZ7|1|5|G|392
6UZ7|1|5|U|393
6UZ7|1|5|G|394
6UZ7|1|5|A|395
6UZ7|1|5|A|396
6UZ7|1|5|A|397
6UZ7|1|5|A|398
6UZ7|1|5|A|399
6UZ7|1|5|G|400
6UZ7|1|5|U|401
6UZ7|1|5|A|402
6UZ7|1|5|C|403
6UZ7|1|5|G|404
*
6UZ7|1|8|C|19
6UZ7|1|8|U|20
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain AC
- KLLA0B07139p
- Chain AP
- KLLA0A06336p
- Chain AY
- KLLA0B05742p
- Chain Bl
- 60S ribosomal protein L39
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