J3_6V39_007
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CAAG*CCGAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 6V39|1|AN1|A|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_007 not in the Motif Atlas
- Homologous match to J3_5J7L_042
- Geometric discrepancy: 0.2439
- The information below is about J3_5J7L_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
6V39|1|AN1|C|1301
6V39|1|AN1|A|1302
6V39|1|AN1|A|1303
6V39|1|AN1|G|1304
*
6V39|1|AN1|C|1603
6V39|1|AN1|C|1604
6V39|1|AN1|G|1605
6V39|1|AN1|A|1606
6V39|1|AN1|A|1607
6V39|1|AN1|A|1608
6V39|1|AN1|C|1609
*
6V39|1|AN1|G|1618
6V39|1|AN1|U|1619
6V39|1|AN1|G|1620
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L34
Coloring options: