3D structure

PDB id
6V39 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
UA*UACCGAUGG*CAG
Length
14 nucleotides
Bulged bases
6V39|1|sN1|U|720
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6V39_018 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.1613
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6V39|1|sN1|U|669
6V39|1|sN1|A|670
*
6V39|1|sN1|U|714
6V39|1|sN1|A|715
6V39|1|sN1|C|716
6V39|1|sN1|C|717
6V39|1|sN1|G|718
6V39|1|sN1|A|719
6V39|1|sN1|U|720
6V39|1|sN1|G|721
6V39|1|sN1|G|722
*
6V39|1|sN1|C|729
6V39|1|sN1|A|730
6V39|1|sN1|G|731

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain f
30S ribosomal protein S6
Chain k
30S ribosomal protein S11
Chain o
30S ribosomal protein S15
Chain r
30S ribosomal protein S18
Chain u
30S ribosomal protein S21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1174 s