J3_6V39_022

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

6V39|1|sN1|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V39_022 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.16

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

6V39|1|sN1|C|987
6V39|1|sN1|U|988
6V39|1|sN1|U|989
6V39|1|sN1|G|990
*
6V39|1|sN1|C|1042
6V39|1|sN1|A|1043
6V39|1|sN1|G|1044
*
6V39|1|sN1|C|1207
6V39|1|sN1|U|1208
6V39|1|sN1|U|1209
6V39|1|sN1|A|1210
6V39|1|sN1|C|1211
6V39|1|sN1|G|1212

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14