J3_6V39_029
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- AGGACG*CC*GAAAAGU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_029 not in the Motif Atlas
- Homologous match to J3_7A0S_019
- Geometric discrepancy: 0.1223
- The information below is about J3_7A0S_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.3
- Basepair signature
- cWW-tSH-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6V39|1|AN1|A|1419
6V39|1|AN1|G|1420
6V39|1|AN1|G|1421
6V39|1|AN1|A|1422
6V39|1|AN1|C|1423
6V39|1|AN1|G|1424
*
6V39|1|AN1|C|1562
6V39|1|AN1|C|1563
*
6V39|1|AN1|G|1566
6V39|1|AN1|A|1567
6V39|1|AN1|A|1568
6V39|1|AN1|A|1569
6V39|1|AN1|A|1570
6V39|1|AN1|G|1571
6V39|1|AN1|U|1572
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
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