J3_6V39_041
3D structure
- PDB id
- 6V39 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.04 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 6V39|1|sN1|A|650
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V39_041 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.1369
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6V39|1|sN1|C|583
6V39|1|sN1|G|584
6V39|1|sN1|G|585
*
6V39|1|sN1|C|648
6V39|1|sN1|U|649
6V39|1|sN1|A|650
6V39|1|sN1|G|651
6V39|1|sN1|A|652
*
6V39|1|sN1|U|748
6V39|1|sN1|G|749
6V39|1|sN1|A|750
6V39|1|sN1|C|751
6V39|1|sN1|G|752
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
Coloring options: