J3_6V3B_020
3D structure
- PDB id
- 6V3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S in Empty state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.91 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 6V3B|1|sN1|A|972, 6V3B|1|sN1|G|973, 6V3B|1|sN1|A|975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6V3B_020 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.1152
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6V3B|1|sN1|U|952
6V3B|1|sN1|U|953
6V3B|1|sN1|U|954
6V3B|1|sN1|A|955
6V3B|1|sN1|A|956
6V3B|1|sN1|U|957
6V3B|1|sN1|U|958
6V3B|1|sN1|C|959
*
6V3B|1|sN1|G|970
6V3B|1|sN1|A|971
6V3B|1|sN1|A|972
6V3B|1|sN1|G|973
6V3B|1|sN1|A|974
6V3B|1|sN1|A|975
6V3B|1|sN1|C|976
6V3B|1|sN1|C|977
6V3B|1|sN1|U|978
6V3B|1|sN1|U|979
6V3B|1|sN1|A|980
6V3B|1|sN1|C|981
*
6V3B|1|sN1|G|1218
6V3B|1|sN1|G|1219
6V3B|1|sN1|C|1220
6V3B|1|sN1|U|1221
6V3B|1|sN1|A|1222
Current chains
- Chain sN1
- 16s Ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14
- Chain s
- 30S ribosomal protein S19
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