J3_6V3D_019

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AG*UGAAAG*UGAUAGCAAGCUGUACUUGUACAGCGAAGU

Length

38 nucleotides

Bulged bases

6V3D|1|AN1|U|1519, 6V3D|1|AN1|C|1531, 6V3D|1|AN1|U|1532, 6V3D|1|AN1|U|1533, 6V3D|1|AN1|C|1540, 6V3D|1|AN1|G|1541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6V3D|1|AN1|A|1439
6V3D|1|AN1|G|1440
*
6V3D|1|AN1|U|1461
6V3D|1|AN1|G|1462
6V3D|1|AN1|A|1463
6V3D|1|AN1|A|1464
6V3D|1|AN1|A|1465
6V3D|1|AN1|G|1466
*
6V3D|1|AN1|U|1516
6V3D|1|AN1|G|1517
6V3D|1|AN1|A|1518
6V3D|1|AN1|U|1519
6V3D|1|AN1|A|1520
6V3D|1|AN1|G|1521
6V3D|1|AN1|C|1522
6V3D|1|AN1|A|1523
6V3D|1|AN1|A|1524
6V3D|1|AN1|G|1525
6V3D|1|AN1|C|1526
6V3D|1|AN1|U|1527
6V3D|1|AN1|G|1528
6V3D|1|AN1|U|1529
6V3D|1|AN1|A|1530
6V3D|1|AN1|C|1531
6V3D|1|AN1|U|1532
6V3D|1|AN1|U|1533
6V3D|1|AN1|G|1534
6V3D|1|AN1|U|1535
6V3D|1|AN1|A|1536
6V3D|1|AN1|C|1537
6V3D|1|AN1|A|1538
6V3D|1|AN1|G|1539
6V3D|1|AN1|C|1540
6V3D|1|AN1|G|1541
6V3D|1|AN1|A|1542
6V3D|1|AN1|A|1543
6V3D|1|AN1|G|1544
6V3D|1|AN1|U|1545

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains