J3_6V3E_007

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CUUGACAUA*UACAG*CUUACG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6V3E_007 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.5875

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

6V3E|1|sN1|C|987
6V3E|1|sN1|U|988
6V3E|1|sN1|U|989
6V3E|1|sN1|G|990
6V3E|1|sN1|A|991
6V3E|1|sN1|C|992
6V3E|1|sN1|A|993
6V3E|1|sN1|U|994
6V3E|1|sN1|A|995
*
6V3E|1|sN1|U|1040
6V3E|1|sN1|A|1041
6V3E|1|sN1|C|1042
6V3E|1|sN1|A|1043
6V3E|1|sN1|G|1044
*
6V3E|1|sN1|C|1207
6V3E|1|sN1|U|1208
6V3E|1|sN1|U|1209
6V3E|1|sN1|A|1210
6V3E|1|sN1|C|1211
6V3E|1|sN1|G|1212

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14